rs52294998 SNP Detail

Summary

• ID
  rs52294998
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89923497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTTATA TTTAAGCATT
  TCCCAGGCTA AGAACAGACA TACTTATACC AGTTAAAGAC ACAATTTTTT GTAGGAATTA
  ATCCAGGGCC TTATGTCTGT TAGTGATGAA CTCCATGACT GAGCTATAAT ATCTTCTTTT
  TTTTTTGTTT GTTTTTTTTT GTTTGTTTGT TTTGAGATAG GATTTCTCTG TGCAGTCCTG
  R
  CACTCACTCT GTAGACCAGG CTACAAGAGA TCTGCCTGCT TCTGCATCCA AAATATTGGG
  ACCTCCATTA AAAAACAAAA ACAAAAAGTG TATGCTGTTC TGCATTTAAC AGAGAACATG
  AAGTCCTTGC CTATTTTCTG TGAAAAGGAA AAACACTTTT AATTATGCTC CATTAAGTAC
  AACTTCTGGA CTCTTTTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss135475467	ENSMUSSNP7133185	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52294998					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89923497 () rs orientation: forward

Symbol	Name	Function Class
Tssr34181	transcription start site region 34181	1758 bp upstream
Tssr34182	transcription start site region 34182	629 bp downstream
Tssr34183	transcription start site region 34183	1419 bp downstream
Ubap2l	ubiquitin-associated protein 2-like	Intron