rs52295212 SNP Detail

Summary

• ID
  rs52295212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35018172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATCTCTGA GTTCGAGGCC AGCTTGGTCT ACAAAGAAAG
  TTTCAGGACA ATGAAAGCTA CACAAAAAAA CCCTGTCTCG TCTCGAGAAA AAAAAAAAAA
  R
  AAGAAGAAGA AAACGAAAAC AAACAAACAA CAAAAACAAT ATTGGTCTCT GTACACCCCA
  TCCTGGCTCT GCCATGCGCC TGAGTACTGG AAGGACACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148806760	ENSMUSSNP7200897	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322156924	CHEV_7_36103766	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52295212					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35018172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	143 bp distal
Gpatch1	G patch domain containing 1	307 bp upstream
Rr645358	regulatory region 645358	298 bp distal
Rr645359	regulatory region 645359	36 bp distal
Rr645360	regulatory region 645360	1137 bp proximal
Tssr72030	transcription start site region 72030	310 bp upstream