rs52295286 SNP Detail

Summary

• ID
  rs52295286
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20455809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCCACCT CCAGACCGAA
  CTTGGACGTG TGGGCTCCCC TCTGGGTCGA AGACCCGCTC CAGAGTAGGA TTCTGGTACT
  CAACCCCGGC TGTTGGGTTC CCAGACCCGG CCTCTGTGCG AGTAGTAGCG ACCCCACTCT
  TGAGCTGAGA ACCTTGGTCC CGCAGCCTGG GTAGCGGCTC GACCCCAAGA ATAGGTAGCC
  S
  AGCCCCAGAG TACGAGGTCC CAACCCTGAG ATAGAGGCCC CTCCCCCAGG AGGGATGCCC
  CGCCCCCAGG AAGGATGCCC CGCCCCCGCT GTTCCAGCCA GACAATAAAG TCGGCGCTCT
  AGGCGGGTGC GTGCTTGGCA GCCTCGTCGC GAAGCGCTTT GTACCGGCGG CCGCTGGGCC
  TGAGCTCTCG CGCCCCGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61358664	NES16737638	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52295286					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61358664	NES16737638	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20455809 () rs orientation: forward

Symbol	Name	Function Class
7030419G21Rik	RIKEN cDNA 7030419G21 gene	within coordinates
Cpgi21390	CpG island 21390	within coordinates
Gm67703	predicted gene, 67703	900 bp upstream
Rr193892	regulatory region 193892	992 bp proximal
Rr199509	regulatory region 199509	1409 bp distal
Tssr83900	transcription start site region 83900	95 bp upstream