rs52295366 SNP Detail

Summary

• ID
  rs52295366
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149152060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCAGAAT GCCCAACCAG
  TCACACGATT AGGCTTCTCT ATGGAAAATC GGTAAAACCA GCTGTTGAAC CAAACTGGTC
  ACAGTTATGA GGAAGCTGGT GTTGACATGA TATGAGCCAA GTGACACAGG TTAGGTATCT
  TTCAGTGCTA ATCTCTCAGC ATAAACACAC AAGCATTTAC AGAGGGCAAG AGAGATCTCC
  M
  AGCATCTGCC CTGTTGCTGC TGTTGCTGAT GCTGTTGCTG ATACTGTTGC TGCTGCTGCT
  GCTCTGTCTC TCCTGTCAGG AAAGATACTC TGTGACTGAC GAGATGGACA CATGTGATAC
  TTTAAAAGAA ACTGTCAAGG AAATGATAAG GAATTTCCAT GAGACTGTAG AAGATTAGGG
  ATTTTGAAAG TGGGCAGACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136071467	ENSMUSSNP887761	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss321019011	CHEV_3_149109387	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52295366					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149152060 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	922 bp upstream
Rr398127	regulatory region 398127	599 bp downstream
Rr587324	regulatory region 587324	1322 bp distal
Rr587325	regulatory region 587325	788 bp distal
Tssr36100	transcription start site region 36100	1179 bp upstream
Tssr36101	transcription start site region 36101	1158 bp upstream
Tssr36102	transcription start site region 36102	1145 bp upstream
Tssr36103	transcription start site region 36103	1054 bp upstream
Tssr36104	transcription start site region 36104	1006 bp upstream
Tssr36105	transcription start site region 36105	928 bp upstream