rs52296482 SNP Detail

Summary

• ID
  rs52296482
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128518221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA AAGAAAGAAA GAAAGAAAGA
  A
  AGAGAGAGAG AGAGAGAGAG AGAGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145462274	ENSMUSSNP2163787	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52296482					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128518221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	300 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Gm57160	predicted gene, 57160	1891 bp upstream
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	599 bp upstream
Rr396264	regulatory region 396264	1668 bp upstream
Tssr196	transcription start site region 196	1752 bp downstream
Tssr8536	transcription start site region 8536	470 bp upstream
Tssr8537	transcription start site region 8537	793 bp upstream
Tssr8538	transcription start site region 8538	821 bp upstream
Tssr8539	transcription start site region 8539	835 bp upstream
Tssr8540	transcription start site region 8540	1961 bp upstream
Tssr13462	transcription start site region 13462	1852 bp upstream
Tssr13463	transcription start site region 13463	1752 bp upstream
Tssr13464	transcription start site region 13464	1710 bp upstream
Tssr13465	transcription start site region 13465	1697 bp upstream
Tssr13466	transcription start site region 13466	1626 bp upstream
Tssr13467	transcription start site region 13467	1584 bp upstream
Tssr13468	transcription start site region 13468	1498 bp upstream
Tssr13469	transcription start site region 13469	1444 bp upstream
Tssr13470	transcription start site region 13470	1354 bp upstream
Tssr13471	transcription start site region 13471	1282 bp upstream
Tssr13472	transcription start site region 13472	1214 bp upstream
Tssr13473	transcription start site region 13473	1199 bp upstream
Tssr13474	transcription start site region 13474	1138 bp upstream
Tssr13475	transcription start site region 13475	1117 bp upstream
Tssr13476	transcription start site region 13476	1105 bp upstream
Tssr13477	transcription start site region 13477	1039 bp upstream
Tssr13478	transcription start site region 13478	332 bp downstream
Tssr13479	transcription start site region 13479	361 bp downstream
Tssr13480	transcription start site region 13480	683 bp downstream
Tssr13481	transcription start site region 13481	1800 bp downstream