rs52296607 SNP Detail

Summary

• ID
  rs52296607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCAAGTT CCATTCCCAG
  AATCTACTCG GTGACGTATA ACACTCATAA CTCCAGTTCT AGGGGAGACA ATGCCCTCTT
  TTGACTTCCT CATGCACCAA ATACACAGGT ATGCACAGAC ATATATGGGA ACAAAAGGTT
  CATGCACATA AATAAATCTA AAAAAAATTA AGGTTCAGCA AACTAGCTAG CTTTTTGTTT
  Y
  TGTTTCTGTT TGTTTGTTTT TCTGTTAGAC AGGGTTTCTT TGTATAACAG AGCCCTGGCT
  GTCCTGGACT TGCTTTGTAG ACCAGGCCGG TCTCAAACTC AAAGATAGCT GTATGCTGCT
  TGAGTGCTGG GATCAAAGGC ATGGACCACC AAGCCTGGCC TAGCAAACTA GTTTAATCAC
  GGTTCTTTCA CCAAGCCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647288	ENSMUSSNP2345452	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss322398760	CHEV_7_117910606	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52296607					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366299 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1114 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	991 bp proximal
Rr653308	regulatory region 653308	701 bp proximal
Rr653309	regulatory region 653309	1329 bp proximal
Rr653310	regulatory region 653310	1830 bp proximal
Tssr68503	transcription start site region 68503	971 bp upstream
Tssr68504	transcription start site region 68504	1014 bp upstream
Tssr68505	transcription start site region 68505	1046 bp upstream
Tssr68506	transcription start site region 68506	1077 bp upstream
Tssr68507	transcription start site region 68507	1523 bp upstream
Tssr68508	transcription start site region 68508	1738 bp upstream