rs52296939 SNP Detail

Summary

• ID
  rs52296939
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37692492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCAAGTC TCATGACTGC
  AGGCAATTAA AAAGGTGAAG CTGACTTCAT TAAATGTCTT CCAGATTCAA GGTTACTAAA
  TCCTAACCTA GGAACGTGTG ATCTCAAGAA ACACACAATG GAGGCATTTA AGCAGAATCA
  ATTTTGTGCA ATATATTTGA TTTTGAAATA GACCATGACC TTTGAAGGTA ATATTTTTAA
  T
  ATTTTATGGA TTATTATTAC TATTATTATT ATTAAAAATT TTTAAACTTA AGAGATTTGT
  TTTAGCACAT CTCTGGTCCA AATATTCTGA AATGTAAATA GGAATCTTTG AAATTATGTT
  TTTATAAGTG TTATGTGGTT CAAACTCTCC ATTGTTGCCT CTCCTCATCT TATTACATTG
  GAGAATTGGC CCCAAATTTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134809915	ENSMUSSNP903190	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52296939					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37692492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	1338 bp proximal
Gm42922	predicted gene 42922	1762 bp downstream
Rr575523	regulatory region 575523	1114 bp proximal
Rr575524	regulatory region 575524	1748 bp proximal
Spry1	sprouty RTK signaling antagonist 1	1604 bp upstream
Tssr28908	transcription start site region 28908	1321 bp upstream
Tssr28909	transcription start site region 28909	1562 bp upstream
Tssr28910	transcription start site region 28910	1585 bp upstream
Tssr28911	transcription start site region 28911	1602 bp upstream
Tssr28912	transcription start site region 28912	1642 bp upstream