rs52297137 SNP Detail

Summary

• ID
  rs52297137
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44837168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGCTTA GCGGTAGAAT
  AATTGCCTAG CATAGTATAG ACCTTGGCTA GAAAGACCCC TGGTGTTCTT GAGATAGAGC
  CTCTGTGTAG CTTAGAATCA TTTTAGTGGT AAGCCTTCCT TCCATTCCCC CATCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCACTTTA
  T
  TATTATTTTT TAAAGACAGG GTTCCTCTGT GTATCCGTGG CTCTCCTGGA ACTTGCTCTG
  TAGAGCAGGC TGGTCTCGGA GATCCGCCTG CCTCTGCCTC CCCAGCACTG GGATTAAAGG
  CATACGCCAC CATCACCATG AAGCTTTTTA AAACGACATT TCATGTCTTT CACCATGAAT
  AAGCGCATCT TGACAGTTTT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss149131023	ENSMUSSNP4125679	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52297137					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44837168 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	1154 bp upstream
Kash5	KASH domain containing 5	within coordinates
Rr380751	regulatory region 380751	735 bp downstream
Tssr72334	transcription start site region 72334	956 bp downstream
Tssr72335	transcription start site region 72335	1810 bp downstream
Tssr72336	transcription start site region 72336	1903 bp downstream
Tssr72337	transcription start site region 72337	1927 bp downstream