rs52297236 SNP Detail

Summary

• ID
  rs52297236
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100853925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACGTAGATGA AGAAACTCCC
  W
  CACACAATGC TTACCTGATG CTTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137997076	ENSMUSSNP4728804	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss324138819	CHEV_12_102125876	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52297236					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100853925 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	405 bp upstream
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	12 bp proximal
Rr471363	regulatory region 471363	233 bp proximal
Tssr114718	transcription start site region 114718	1785 bp downstream
Tssr117330	transcription start site region 117330	170 bp downstream
Tssr117331	transcription start site region 117331	204 bp downstream
Tssr117332	transcription start site region 117332	224 bp downstream
Tssr117333	transcription start site region 117333	259 bp downstream
Tssr117334	transcription start site region 117334	285 bp downstream
Tssr117335	transcription start site region 117335	360 bp downstream
Tssr117336	transcription start site region 117336	407 bp downstream