rs52298638 SNP Detail

Summary

• ID
  rs52298638
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116241522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGAATGT GATCTGATCC
  TAGGTTCTTT TTTTTTTTTT TAAATCATCA CTGCCCAAAG GCTGTTGTGA AGCAAAAGTG
  GGGATAGAAG CACACATACA CACATAGAAA CACACAACAC ACACATACAC ACAGACACAC
  ACACACACAC ACAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGTAGCAA
  A
  TATCGATGTC TAAGGTAATG AACGCAGCCT GGCTGTGTGA GAGCCCATCA GCCTTCACCT
  GTTATTTATA GCACTGTTGT TTACCCCACA TCAGCACAGG CATCTCTGAA TTGGAGATGA
  CTAACAGTTT GGGTTGACTT GGTTTAATTA GACTGAATTA ATATGGCCAC CGTACAGTTG
  TGTGGGAGGG CCATTCATTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135669731	ENSMUSSNP3677074	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52298638					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116241522 () rs orientation: forward

Symbol	Name	Function Class
Gm22361	predicted gene, 22361	518 bp downstream
Gm66091	predicted gene, 66091	within coordinates