rs52298719 SNP Detail

Summary

• ID
  rs52298719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34584059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAATATCT AGTCAAAAAC
  TCTGACCCAT CATTGATTCT GCTCCACTGA ATAGTATGCC CTATTTTCTC CTCTGTGAAA
  AATTACACAC ACACACACAC ACACACACAC ACACACACAC ACACGCAGAG GCATGCATGC
  ACACACATGT ACATTTGTAT ACACACAAAG CAGAGCAAAA GAAACAGAGA GGCAGAAAGC
  R
  AGAAAATCAA TTGATGTATC AGTCAATCAG TCAACCATAG CCCCCTATAT TCTTCAAAGA
  GGGAACAACC TTGTGAGTGT GCCATTTGCC TGATTTAACA ACTTCTGTTA CTTAGAGATT
  TTCTGCAGTG CTAAAGCAAC ATCTCTTATA TCAAGGCACA ATGCCTAAGT GTCCAGCCCA
  CCGTTTCCTA TCCATCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63254856	NES17488603	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	G		A	A	G	A
ss146341850	ENSMUSSNP6570354	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52298719					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63254856	NES17488603	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34584059 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	1311 bp upstream
Rr405932	regulatory region 405932	853 bp upstream
Rr546756	regulatory region 546756	821 bp proximal
Rr546757	regulatory region 546757	1322 bp proximal
Tssr156136	transcription start site region 156136	864 bp upstream
Tssr156137	transcription start site region 156137	1268 bp upstream