rs52299577 SNP Detail

Summary

• ID
  rs52299577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19193166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GGAGAGAGGA GAGAGAATCA
  Y
  ATGCCAAGGC GGAGGGAGGG AACGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148476728	ENSMUSSNP4144410	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss322117311	CHEV_7_20044590	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52299577					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19193166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	168 bp distal
Gm23099	predicted gene, 23099	1556 bp downstream
Mark4	MAP/microtubule affinity regulating kinase 4	420 bp upstream
Rr400149	regulatory region 400149	184 bp downstream
Rr643146	regulatory region 643146	431 bp distal
Rr643147	regulatory region 643147	within coordinates
Tssr64858	transcription start site region 64858	306 bp downstream
Tssr70918	transcription start site region 70918	556 bp upstream
Tssr70919	transcription start site region 70919	502 bp upstream
Tssr70920	transcription start site region 70920	465 bp upstream
Tssr70921	transcription start site region 70921	441 bp upstream
Tssr70922	transcription start site region 70922	385 bp upstream
Tssr70923	transcription start site region 70923	within coordinates