rs52299658 SNP Detail

Summary

• ID
  rs52299658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15198656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTTCCTC AGCCTTGGAC
  ACCACAGAGC GTCGGGAAGC CAAGCCAGGT GTGAAACAAG TTATAACAAG TCCCTGTCTC
  ACAGGTTTCC TCCCGCTCCT TTGGGAAACA ATACACACAC ACACAAACAC ACACACACAC
  ACACACACAC ACAAGCACAC GCGCGCCCTC TTATTACATC TGTCCGAGGA GAAGAGGATC
  Y
  TGGAGGTTAT ACTTCTGGGG AATTCTTCTC TAAGCGCTAC TAGAGAAGCT GTCAGATTTG
  TCATGGCATT CTGTTCTTCG TCTCAGCTCT GGATATATGT AAAGAAATGT ACTAGCTTCC
  CAGAGCTTGT AGCAGTGGGC AACTAAGTGG ACACACATGG CTCGGAGCTC AGCTCAAGAG
  CCAGCCCAGA CTAGTTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325532716	CHEV_18_15224108	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52299658					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15198656 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	429 bp distal
Gm58434	predicted gene, 58434	within coordinates
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr393314	regulatory region 393314	16 bp upstream
Rr534350	regulatory region 534350	1585 bp distal
Tssr152510	transcription start site region 152510	1982 bp upstream
Tssr152511	transcription start site region 152511	1944 bp upstream
Tssr152512	transcription start site region 152512	1485 bp upstream
Tssr152513	transcription start site region 152513	1459 bp upstream
Tssr152514	transcription start site region 152514	1444 bp upstream
Tssr152515	transcription start site region 152515	1373 bp upstream
Tssr152516	transcription start site region 152516	1264 bp upstream
Tssr152517	transcription start site region 152517	1243 bp upstream
Tssr152518	transcription start site region 152518	1225 bp upstream
Tssr152519	transcription start site region 152519	1156 bp upstream
Tssr152520	transcription start site region 152520	1123 bp upstream