rs52299979 SNP Detail

Summary

• ID
  rs52299979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:55130855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAACCACA TGGTGGCTCA
  CAACCATCGG TAATGGGATC TGACGCCCTC TTCTGGTGTA CCTGAAGACT GCAACAGCTT
  ACTCACATAT ATAAAATAAA TACATCTTAA AACCAAAACC AAAACAACAC AAAACAAAAA
  CAAGAAAAAG AAAAGAAAAA AGAAGAACCG AGCAGTAGTA GGTAAATGCT GGGGCAGTGG
  R
  TATAGTTCAG TGCTAGGAAA CTTGTTCAGC TTGCACAGGG CCTCAAGCCC CACACTTGCA
  CATGAAATAA CATAGAGTAT TTATTGCAGT CTAAATATAT GCTTTGCTAA ATGTTTTCTA
  TGGAAGGTTT ACAACAATTC CATTATAAGT ACTCATAAAA TTCCCAGTTT ATGGGCAAGG
  GCCAAGAGCA CAAGGTCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63515161	NES17007401	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52299979					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63515161	NES17007401	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:55130855 () rs orientation: forward

Symbol	Name	Function Class
D15Mit26	DNA segment, Chr 15, Massachusetts Institute of Technology 26	1096 bp proximal
D15Mit26.1	DNA segment, Chr 15, Massachusetts Institute of Technology 26.1	1185 bp proximal
Rr303058	regulatory region 303058	55 bp distal
Rr303059	regulatory region 303059	1146 bp proximal