rs52300071 SNP Detail

Summary

• ID
  rs52300071
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84413663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TAGCACGGAG TCACCACTAC CTGTCAGCCT GTGGGTGGGT
  AGGGGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGAGAGA GAGAGAGAGA
  C
  AGAGACAGAG ACAGAGACAG AGACAGAGAC AGAGAGAACC ATAGAGTATT GACTTAGCAA
  TTATGGAGGC CAGCAAAATT GGAAACTTGC AAGGCTAACA T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146130434	ENSMUSSNP3771582	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52300071					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84413663 () rs orientation: forward

Symbol	Name	Function Class
Rr531986	regulatory region 531986	1578 bp distal
Tssr146028	transcription start site region 146028	1947 bp upstream
Tssr149629	transcription start site region 149629	168 bp downstream