rs52300625 SNP Detail

Summary

• ID
  rs52300625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134947294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACGAAG TTGTGAAGTT
  CAGCACACCG AGACCAACCA CTGGGGGGCA GCAGCAGAGC AGCAGAAAGT CATCTGTCTA
  GAAGCTAGGA GGGCTGCTTA GCACTCCATC TCTATCTCTA AGAAGCTATT CAAAACACAA
  ACAAAAAAGC AGTATAGTAT ACACAGCTGA AAATTAATTA TATTAAAATT AAAAATAATA
  Y
  TTTTGGCCTA AGAAAATATG GAAATGAACA CCTGCAGTTC GTGGAAATAC AAACTGGTAC
  AGACTTTGAA ATTTTGGCAA AATGCATAAA GTAGCTAGAG ATGGTGGTAC GGGCTATAAT
  CTGCATCCAG GAGAGCTGCA GCCAACAGTA AGACACCGTC TCAAAAGGAC GAGGAAAGGT
  GCAAACCTTC CCACACCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147541650	ENSMUSSNP469562	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321351240	CHEV_4_134775898	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52300625					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134947294 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86244	regulatory region 86244	within coordinates
Rr102925	regulatory region 102925	108 bp proximal
Tssr43965	transcription start site region 43965	1329 bp upstream