rs52302113 SNP Detail

Summary

• ID
  rs52302113
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:120125449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGCTCA GAAGTGGTGG
  CAGGATGGCT AGTGTCTAAC CTTTGATTTA ATTTAAAAGT CAGGACCTGA TTATTCTAAA
  GTCATAGCAC AACTTCTATA TTGTGTCTCT GTTATTGCTG GTATGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGCATTCAT ATGTGTTTGT GTGTGTGTGT ATTCATATGT GTGTGTGTGC
  G
  TATTTGTGTG CAAGTGTGTG CAGATGTGTG TGTGAGTCTG TGGAGGGGGT AGAAGTTGAC
  ATGAGGTACC TTTTGGGACA GTCTCTCTCT GAACCTGGTG TTCACTGATT GGCTAGACTC
  ACTGACCAGG ATGCTCTGTT ATCTGCCGAC CTCTACCCCA TTCCTGTACT GGGGTTGCAG
  GTGTGCACCA CTATACCTGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145313907	ENSMUSSNP5494328	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52302113					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:120125449 () rs orientation: forward

Symbol	Name	Function Class
Rr396237	regulatory region 396237	178 bp downstream
Rr417161	regulatory region 417161	110 bp distal
Rr417162	regulatory region 417162	349 bp distal