rs52302912 SNP Detail

Summary

• ID
  rs52302912
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163883426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCACAGTC GACAGACAGC CGTGAGGGAA CTCTGAGGGA
  ACTCTGGGTC TGAGACATAC AACAATCTCT CTCTCTCTCT CTCTCCCTTT CTCTTTCTCT
  T
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTTTC TCTCTCTCTC
  TCTCTCTCCT AGATAGCACA GGCTGGCTTT GACTCACTA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148218692	ENSMUSSNP3333388	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs52302912					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163883426 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pabpc1l	poly(A) binding protein, cytoplasmic 1-like			Intron
				Noncoding-Transcript-Variant
Rr569544	regulatory region 569544			667 bp distal
Tssr21509	transcription start site region 21509			862 bp upstream