rs52303371 SNP Detail

Summary

• ID
  rs52303371
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46857930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGATCC CAAAGACACA
  GCCAAAGACC CCAGTCTGTG CACAAAAATG ATACATTTAT TGAAAGAGTA TTTTTTTAAT
  ACAAAAGAAA GCTCTGTACA GAAGATGTGA CCATGTCCAC TATTCCTGGG TCAACATCCC
  AGGAGAAGTA GAAACCACGG ATATACCACA CGCACTCCAC ATTCACACAC GTATTCACTC
  R
  GACACAGGCG CGCGCACACA CCCCTAGAGC CACTTAATTA GGGATACACC AAGGGTTGCT
  GCACATAGAA ATGCCACCTC AGTCCTGCCT GACAAACAGG TTCTCCCAAG GCCACAATCA
  CACAGCACAC GTTGGTAAGC ACTTGGCCTG AATCACTTGC CCAGGCTCTA TCTTTTGTGA
  GGAGGAATCA ACACCTCCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62758997	NES17342666	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52303371					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758997	NES17342666	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46857930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9232	CpG island 9232	408 bp distal
Cul9	cullin 9	616 bp upstream
Rr527757	regulatory region 527757	627 bp distal
Rr527758	regulatory region 527758	177 bp distal
Rr527759	regulatory region 527759	within coordinates
Rr527760	regulatory region 527760	1964 bp proximal
Srf	serum response factor	1325 bp downstream
Tssr148330	transcription start site region 148330	671 bp upstream