rs52304515 SNP Detail

Summary

• ID
  rs52304515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123366615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGCGGCCG CGGTCAGCGA
  CATCCAGGAT CTGATGCGAC GCAAGGAGGA GATCGAGGCG GAGATCAAGG CTAATTACGA
  CGTCCTGGAG AGCGTGAGTG TGGCGGGGAG GCCTGCGGAC GAGGCTCGGG GTCGCTGCCA
  AGCAGTGTCC TAGAGGGGGT CTTTGCTGCG TGCCACACGC CCCTTTAAGC ATTTTTTCTT
  Y
  ACGTGGGATT AATTTTCATT TTCGGAAGCA TTAACTTTGC ATTTTAAAGT TTTTTGTTTG
  TTTGTTTTTA ACGCAGCCCC TAAGCTGGCT TCGAACTCGT GATCCTCCTG CTTCATCTTT
  CTGAGTGCGG GAATCGCGGG CCTGTGCAAC CATGATATAG GCCTTAGTGA AACTGCCTCG
  GTCGCAAGGA TAGACTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60834928	NES16023936	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52304515					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834928	NES16023936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123366615 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16580	CpG island 16580	within coordinates
Psmd9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	within coordinates
Rr124341	regulatory region 124341	within coordinates
Rr399344	regulatory region 399344	181 bp downstream
Tssr48774	transcription start site region 48774	325 bp downstream
Tssr48775	transcription start site region 48775	251 bp downstream