rs52305374 SNP Detail

Summary

• ID
  rs52305374
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53868942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGTTCGA GGCCAGCCTG GTCTACAGAG TGAGTTCTAG
  GACAGCCAGG ACTACACAGA GAAACACTGT CTCGAAAAAA CAAAAACAAA CAACCCCCCC
  M
  AAACTAAACA AAACAACAAC AAAAAACTTG TTAAGGTTGT TTAAAAGAGA AAGAATCATA
  CCTTTTATTT ATCATTTAAT TCATATGTTA GTGTGATAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss132135278	ENSMUSSNP2805965	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52305374					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53868942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	1305 bp proximal
Gm30927	predicted gene, 30927	1915 bp upstream
Rr447212	regulatory region 447212	234 bp distal
Rr447213	regulatory region 447213	1131 bp proximal
Rr447214	regulatory region 447214	1804 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	1909 bp upstream
Tssr101465	transcription start site region 101465	1928 bp upstream
Tssr107965	transcription start site region 107965	1771 bp downstream
Tssr107966	transcription start site region 107966	1833 bp downstream