rs52306039 SNP Detail

Summary

• ID
  rs52306039
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70761777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTCTTC TTCTTCTTCT
  TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT
  TCTCCTTCTT CTCCTTCTCC TCCTCCTCCT CTTCCTCCTC CTCCTCCTTC TTCTTCTCCT
  CCTCCTCCTT CTTCTTCTCC TCCTCCTCCT CCTCCTCCTT CTTCTTCTTC TTTTTTTTTT
  G
  GGGGGGGGGA ATGGTGTCAG CAATCAGCAT CAAGCCTAGA AGGATAAACC CCACAGGTGG
  GCAGCCCAGC GAAGTCCAAC CTCTTGCTTT TCTGATCCTC AGCATAGCCT GCAAGGTCTT
  GTTTATCCCC CGCCTATCCA GAGCCAGCCT AGCATTGAAT GCAGAGTAGC TGCTCAGAAA
  GTATTTCTTT GATAAATGAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss146735545	ENSMUSSNP158806	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52306039					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70761777 () rs orientation: forward

Symbol	Name	Function Class
Gm39843	predicted gene, 39843	within coordinates
Rr62360	regulatory region 62360	1625 bp proximal
Rr64262	regulatory region 64262	1198 bp distal
Rr367203	regulatory region 367203	501 bp downstream
Rr367204	regulatory region 367204	189 bp downstream
Rr367205	regulatory region 367205	1679 bp upstream
Tssr18236	transcription start site region 18236	267 bp downstream