rs52306389 SNP Detail

Summary

• ID
  rs52306389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:83078563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGTCCTT ATTCTGTCTA
  TCACAATTAG AAGTAGACTC TAGGGCTTTC AGAAAATGTA TTTAAAGGGG GCATCATCTG
  GGGAGAATAT CCTTTGCCTG TCTTTCTTTT CCTCTCTCTT CTGCCTCTTC CCTTCTTTCC
  CTCCTTCCTT CCTTCCTTTT CCTCCAGGAA GTGACCTTGA GGATGGAAGC CAACCACTGG
  Y
  TGATGAAAGA GGAGCACTGA GGTGGAGCAC TGAGGTGGAG CACTGAGGTG GAGCACCTTA
  ATGACCCATC CAGCCCGCTC CAGACTTTGT TTACCAAATA CATATGAATC TTGTTTAATC
  CACTGCTAAC TTTTGCTGTC GTTTTGTGTG GAACATTCAG ACGGACCTAA TCCCAACTAC
  TCAAAATCAT GCACAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61658593	NES17605923	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T		C	C	T	C
ss137926474	ENSMUSSNP2401413	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52306389					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61658593	NES17605923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:83078563 () rs orientation: forward

Symbol	Name	Function Class
Rgs6	regulator of G-protein signaling 6	within coordinates
Rr261712	regulatory region 261712	1238 bp proximal
Rr268571	regulatory region 268571	563 bp distal