rs52307646 SNP Detail

Summary

• ID
  rs52307646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58156059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA ATCAAAAGAG AAAGCAGCTG
  Y
  GTGAATCCTG TTGGTCTTAG CAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61405745	NES16787283	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52307646					SNP	T	T	T	T	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61405745	NES16787283	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58156059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21844	CpG island 21844	1401 bp distal
Pml	promyelocytic leukemia	within coordinates
Rr679900	regulatory region 679900	1605 bp distal
Rr679901	regulatory region 679901	1537 bp distal
Rr679902	regulatory region 679902	947 bp proximal
Rr679903	regulatory region 679903	1342 bp proximal
Tssr89888	transcription start site region 89888	1635 bp upstream
Tssr89889	transcription start site region 89889	1311 bp upstream
Tssr89890	transcription start site region 89890	853 bp downstream
Tssr89891	transcription start site region 89891	885 bp downstream
Tssr89892	transcription start site region 89892	926 bp downstream