rs52307954 SNP Detail

Summary

• ID
  rs52307954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:82273346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAA CATATATATG TATATGTGTA
  Y
  ATATATATAT GTATATATAT ATAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148747207	ENSMUSSNP219201	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52307954					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:82273346 () rs orientation: forward

Symbol	Name	Function Class
1700031L13Rik	RIKEN cDNA 1700031L13 gene	786 bp upstream
Tssr51489	transcription start site region 51489	844 bp upstream
Tssr51490	transcription start site region 51490	827 bp upstream
Tssr51491	transcription start site region 51491	802 bp upstream
Tssr51492	transcription start site region 51492	776 bp upstream
Tssr51493	transcription start site region 51493	759 bp upstream