rs52309078 SNP Detail

Summary

• ID
  rs52309078
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83172293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGTGGA GGACTGGAGA
  GATGGATCAG TGGTTAAGAG CAATAGCTGC TCTTCAGAGG ACCCTGGTTT GATTCCCAAC
  ACCCACGTGG TAGCTCATGA CCATCTATAA TTCTAGTCCT AGGGGACCCA ATGCCCTCTC
  CTGGCCTTTG AGGGCACCAG GAACACATAT GGTACACATA CATACATACA TACATGCAGA
  M
  GAAACTACAC ATAACATGAG TTAATTAAAA CAGTTAAGGT AAAGGCTGTC TAGTGTGGTG
  GGACTTGGCG GTGTCGAGTA CTGGGTGTGA GGATGAAGGA ACGTGCAATC TGAGGAAGGA
  GGTAGGACCT GCAACTAGGG GCCATCCGGG AGGGAGCTCC ACCCCCACAG CCTAACCCGG
  TCCTGTGGCT CTGGGGATGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60903740	NES15949679	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52309078					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60903740	NES15949679	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83172293 () rs orientation: forward

Symbol	Name	Function Class
Dctn1	dynactin 1	within coordinates
Tssr57329	transcription start site region 57329	498 bp upstream
Tssr57330	transcription start site region 57330	527 bp upstream
Tssr57331	transcription start site region 57331	565 bp upstream
Tssr57332	transcription start site region 57332	612 bp upstream
Tssr57333	transcription start site region 57333	649 bp upstream
Tssr57334	transcription start site region 57334	688 bp upstream
Tssr57335	transcription start site region 57335	714 bp upstream