rs52309509 SNP Detail

Summary

• ID
  rs52309509
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108537450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTCCAGGC CATCTGAAAC CCTCTCAGCA ATGCACATAA
  AACATAAAAT TAAATTTTAT ATATATATAT ATATATATAT ATATATACAT ATATATGACA
  G
  GGTTTTTCTT TTTCTTTTTT TTTTGGTTTT TCAAGACAGG GTTTCTCTGT ATAGCCCTGG
  CTGTCCTGAA ACTCACTCTG TAGACCAGGC TGGCCTCGA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136952705	ENSMUSSNP497997	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs52309509					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108537450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22350	CpG island 22350	1770 bp proximal
Rr383886	regulatory region 383886	1598 bp downstream
Rr401686	regulatory region 401686	1635 bp upstream
Rr686857	regulatory region 686857	1521 bp proximal
Slc25a20	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	1885 bp upstream
Tssr87151	transcription start site region 87151	1833 bp upstream
Tssr87152	transcription start site region 87152	1848 bp upstream