rs52311389 SNP Detail

Summary

• ID
  rs52311389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16185051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTG GTTTTACCTC TATGAAGTCC
  R
  TTTCCTCATA GACTCCTGGC TTGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148386671	ENSMUSSNP629712	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322110686	CHEV_7_17036475	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52311389					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16185051 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18377	CpG island 18377	1648 bp proximal
Rr400123	regulatory region 400123	1491 bp upstream
Rr642666	regulatory region 642666	1032 bp proximal
Rr642667	regulatory region 642667	1405 bp proximal
Tmem160	transmembrane protein 160	1816 bp upstream
Tssr64613	transcription start site region 64613	1801 bp upstream
Tssr64614	transcription start site region 64614	1898 bp upstream