rs52313171 SNP Detail

Summary

• ID
  rs52313171
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115078257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GGACAGCCAG AGCTATACAG AGAAACCCTG TCTCGAAAAA
  CCAAAAAAAA AAAAAAACAA AAAAACAAAA AAACAAAAAA AAAACCAAAA AAAAAAACCC
  M
  AAAAAAAACA AACAAAAACA ACAACAAAAA CAACACACAC ACAAAAAAAA TGAAGTGTAG
  ATCTGACCCT CTCAAGCTGT CCTGATCCCC ACATATGCAC T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149119394	ENSMUSSNP374915	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52313171					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115078257 () rs orientation: forward

Symbol	Name	Function Class
2210016L21Rik	RIKEN cDNA 2210016L21 gene	1956 bp upstream
Cpgi16342	CpG island 16342	1859 bp proximal
Rr399277	regulatory region 399277	1850 bp upstream
Rr618069	regulatory region 618069	1143 bp proximal
Rr618070	regulatory region 618070	1507 bp proximal
Rr618071	regulatory region 618071	1984 bp proximal
Tssr48192	transcription start site region 48192	1978 bp upstream