rs52314229 SNP Detail

Summary

• ID
  rs52314229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119229820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA TGCTCTCTCT CTTCTGTCTC
  Y
  GTCTGTCTGC TTCTCTCCTT AACAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137047100	ENSMUSSNP2774068	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323219418	CHEV_9_119309872	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52314229					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119229820 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	1364 bp upstream
Cpgi22474	CpG island 22474	848 bp proximal
Gm53515	predicted gene, 53515	within coordinates
Gm69683	predicted gene, 69683	within coordinates
Rr688480	regulatory region 688480	463 bp proximal
Rr688481	regulatory region 688481	704 bp proximal
Rr688482	regulatory region 688482	1209 bp proximal
Rr688483	regulatory region 688483	1701 bp proximal
Rr688484	regulatory region 688484	1766 bp proximal
Rr688485	regulatory region 688485	1926 bp proximal
Tssr87682	transcription start site region 87682	1327 bp upstream
Tssr87683	transcription start site region 87683	1402 bp upstream
Tssr87684	transcription start site region 87684	1472 bp upstream