rs52314508 SNP Detail

Summary

• ID
  rs52314508
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53868975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTAAAA AAAAAAACAA
  CTTAAGCTGG GCGTGGTGGC ACTTGGAAGG CAGAGGCAGA TGGATTTCTG AGTTCGAGGC
  CAGCCTGGTC TACAGAGTGA GTTCTAGGAC AGCCAGGACT ACACAGAGAA ACACTGTCTC
  GAAAAAACAA AAACAAACAA CCCCCCCAAA ACTAAACAAA ACAACAACAA AAAACTTGTT
  R
  AGGTTGTTTA AAAGAGAAAG AATCATACCT TTTATTTATC ATTTAATTCA TATGTTAGTG
  TGATACTTGT CTATGCATAT GTGTATAGAC ATGAATGTCT ACATGGAGAC TAGAGGAATA
  CAGTGGGTGT TCTGCTTTAT TCATTTGAGA CATGGTCTCT CACTGAACTG TGTTGCTGTG
  TCTGGCTTTT CTTTCCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132135282	ENSMUSSNP2765905	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52314508					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53868975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	1272 bp proximal
Gm30927	predicted gene, 30927	1882 bp upstream
Rr447212	regulatory region 447212	267 bp distal
Rr447213	regulatory region 447213	1098 bp proximal
Rr447214	regulatory region 447214	1771 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	1876 bp upstream
Tssr101465	transcription start site region 101465	1895 bp upstream
Tssr107965	transcription start site region 107965	1738 bp downstream
Tssr107966	transcription start site region 107966	1800 bp downstream