rs52315347 SNP Detail

Summary

• ID
  rs52315347
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46139316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGAATAA CAGCATCTAC
  ACATAACAAA AACATTGGCA ACTGGGGCTG GAGAGATGGC TCAGCGGTTT AAGACCACTA
  GCTGCTCTTC CAGAGGTCCT GAGTTCAATT CCCAGAAACC ATATGGTGGC TCACAACCAT
  CTGTAAAGGA ATCTGATTCC ATCTTCTGGT GTGTCTGAAG ACAGAGCGCT CATGTACCTA
  M
  GATAAGGAAG AAAGGAAGGG AGGGAAGGAG GGAGGGAGAC AAGGAAGGAG CTAACAACTC
  CATGTTGGCC TCTGTCATTT CTTCTGAAGC ATCAGAGGGG TCTTCATCCT CAGCTTGGGG
  ATATGAGCCT GTCTGCATCT CACTCAGGCT GACACCTCAG TTGTTTTTGG ATTTAGGGTT
  GGGAGGCTGG CTAAACATGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136424984	ENSMUSSNP1875954	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52315347					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46139316 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	612 bp upstream
Cpgi21701	CpG island 21701	1928 bp proximal
Gm67994	predicted gene, 67994	within coordinates
Tssr84839	transcription start site region 84839	329 bp upstream
Tssr84840	transcription start site region 84840	683 bp upstream
Tssr84841	transcription start site region 84841	815 bp upstream
Tssr84842	transcription start site region 84842	910 bp upstream
Tssr84843	transcription start site region 84843	933 bp upstream
Tssr84844	transcription start site region 84844	1092 bp upstream
Tssr84845	transcription start site region 84845	1144 bp upstream
Tssr84846	transcription start site region 84846	1183 bp upstream
Tssr84847	transcription start site region 84847	1804 bp upstream
Tssr84848	transcription start site region 84848	1891 bp upstream
Tssr84849	transcription start site region 84849	1983 bp upstream
Tssr89313	transcription start site region 89313	1916 bp downstream
Tssr89314	transcription start site region 89314	1976 bp downstream
Tssr89315	transcription start site region 89315	1990 bp downstream