rs52316085 SNP Detail

Summary

• ID
  rs52316085
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113173519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGCACTTGG GAGGCAGAGG CAGGTGGATC TCCCGGCTCC
  AGGCCAGCCT GGTCTACACA GCAGTTCCAC ATCAGCCAGG GCTACAAAAA AAAAAAAAAA
  A
  AAAAAAAAAA ACACAAAAAC AACCTGTCTA GAAAAAAATT AGCCAATCAA CCCCCCACCC
  CCAAGGGGGA AAAACAAACA AAACATCAAA AACCACATTT A                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145257081	ENSMUSSNP6754201	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52316085					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113173519 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Cpgi6107	CpG island 6107	1459 bp distal
Mir449a	microRNA 449a	549 bp upstream
Mir449b	microRNA 449b	434 bp upstream
Mir449c	microRNA 449c	894 bp downstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	within coordinates
Rr486471	regulatory region 486471	1596 bp distal
Rr486472	regulatory region 486472	860 bp distal
Rr486473	regulatory region 486473	1262 bp proximal
Tssr121165	transcription start site region 121165	1754 bp downstream
Tssr121166	transcription start site region 121166	625 bp upstream