rs52316250 SNP Detail

Summary

• ID
  rs52316250
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:9850203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATACAAA GATGGCTAAA
  TAGATGTTCA ACTTTTAGTA GCTCAACCTA AAAGATTTTA AAGCCTTAAA GCCTCTGAAG
  TTGGGGAACA AGTAATCAAT CTTGACTTTC AAAAAGGGAA TAAAAGGTAG ACTTTACCTA
  CTATATTCAG TGGAGGATTA GCTTTCTTTG GGGGGGGGGG TATTTAAACA ATTTTTATTA
  T
  ATATTTTCTT CATTTACAAT TCAAATGCTA TCCCTAAAGT CCCCTATACC CTCCCCCTGC
  CCTGCTCCCC AACCCACCCA CTCCTGCTTC CTGGACCTGG CATTCCCCTG TACTGGGACA
  TATAAAGTTT GCGAGACCAA GGGCCTCTCT TCCATCTTCT ACTACATACA TATGCAGCTA
  GAGACACGAG CTCTAGGGGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146600579	ENSMUSSNP6478775	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52316250					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:9850203 () rs orientation: forward

Symbol	Name	Function Class
Colec12	collectin sub-family member 12	within coordinates
Rr352540	regulatory region 352540	1401 bp distal
Tssr150016	transcription start site region 150016	1463 bp downstream