rs52316312 SNP Detail

Summary

• ID
  rs52316312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103877605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT GCCCCCCATA AATACATACA
  Y
  ACACACACAC ACACACATAT ATGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135565690	ENSMUSSNP193704	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320859276	CHEV_3_103774212	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52316312					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103877605 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13642	CpG island 13642	1330 bp distal
Phtf1	putative homeodomain transcription factor 1	within coordinates
Phtf1os	putative homeodomain transcription factor 1, opposite strand	1973 bp upstream
Rr582453	regulatory region 582453	1833 bp distal
Rr582454	regulatory region 582454	1656 bp distal
Rr582455	regulatory region 582455	1155 bp distal
Rr582456	regulatory region 582456	1545 bp distal
Rr582457	regulatory region 582457	1468 bp distal
Tssr31040	transcription start site region 31040	1895 bp downstream
Tssr31041	transcription start site region 31041	1628 bp downstream
Tssr34872	transcription start site region 34872	1968 bp upstream