rs52316335 SNP Detail

Summary

• ID
  rs52316335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103364757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACT GGAAAGCTTG TGTACCATTA
  Y
  GCTTGGATTC TTACATGGAT TCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136878089	ENSMUSSNP3196382	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52316335					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103364757 () rs orientation: forward

Symbol	Name	Function Class
Gm16252	predicted gene 16252	within coordinates
Rr207116	regulatory region 207116	within coordinates
Tmem108	transmembrane protein 108	within coordinates
Tssr91216	transcription start site region 91216	1743 bp downstream
Tssr91217	transcription start site region 91217	1763 bp downstream
Tssr91218	transcription start site region 91218	1791 bp downstream