rs52316740 SNP Detail

Summary

• ID
  rs52316740
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72213936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAGCTTGC TATGTAGTTA AGGAAGATCT TTCTGTTTCC
  ACCTCCTGAG TGCTAGGATC ATAGACGTGT ACTACTGTGC CTGGCTTTAT TTTTGTTTTT
  T
  TTTTTTTTTT TTTTGTTTGT TTGGTTTGGC TTTTGGAGAA GAGGAGGGGA TCAGTTTATT
  TTTAAGCACT GCTTAACTCA AAAATCCGTG GATTATGCA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss136620201	ENSMUSSNP5482142	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52316740					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72213936 () rs orientation: forward

Symbol	Name	Function Class
Tssr85977	transcription start site region 85977	778 bp downstream
Tssr85978	transcription start site region 85978	15 bp upstream
Zfp280d	zinc finger protein 280D	within coordinates