rs52318186 SNP Detail

Summary

• ID
  rs52318186
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29734730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA AAGAAAGAAA GAAAGAAAGA
  A
  AGAAAGAAAG AAGAACTGAG TGGAG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss133092110	ENSMUSSNP5774035	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321775193	CHEV_6_29684731	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52318186					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29734730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17242	CpG island 17242	608 bp proximal
Rr627623	regulatory region 627623	473 bp proximal
Smo	smoothened, frizzled class receptor	772 bp upstream
Tssr55287	transcription start site region 55287	740 bp upstream
Tssr55288	transcription start site region 55288	880 bp upstream
Tssr55289	transcription start site region 55289	900 bp upstream
Tssr55290	transcription start site region 55290	936 bp upstream
Tssr55291	transcription start site region 55291	1394 bp upstream