rs52318894 SNP Detail

Summary

• ID
  rs52318894
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47412935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGTGTGT GTGTGAGTGT GTGTTTATGT GTGAGTGTGT
  GTGCGAGTGT GTGAGTGTGT GTGTGTGAGT GTGAGTGTGT GAGTGTGTGT GTGAGTGTGT
  G
  TGTGTGTGTG TGTGTGTGGT TTTGCCATGA CTGCTTATGT AGAGAGAGTT CTGTTAGAGC
  TTGGTCAGTG TTTCTCACAC TGGTCTATTC CCTCACAAT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss139400100	ENSMUSSNP4568101	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52318894					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47412935 () rs orientation: forward

Symbol	Name	Function Class
Gch1	GTP cyclohydrolase 1	within coordinates
Tssr128307	transcription start site region 128307	170 bp downstream
Tssr128308	transcription start site region 128308	1826 bp downstream