rs52319375 SNP Detail

Summary

• ID
  rs52319375
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118086641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACACCAA AGGTGTGTGC
  ATGTCAGATA GAGGCCATGA CAGTAGCCAT ATGAAATGCA GAACTGAGCT GAATTGAAAG
  GCCTTGGGCA GCCACTGGAC TCAGTTCAAA GCCGTATTAT TGCATCTGTA CATAGTACAT
  GTTTCAGATC ACTAAATATT GATCAAAATT GATCGAAATC TCTTGTTTTT GTTGCCACAT
  A
  GCAAGAACAA CTGTTCAGCA TGGCATTTAA ATAAAACATT AATATTTTTT AAAAAATTTA
  CAAACACAAT GCCCATTAAT TTAATAATAA TAATAAACTT TAAAAGTTTG AGGATGGATG
  AAGCTTTGGG TAATTAATAC AAAAAAAGAA AAAACCCTAC AAGAAAGATA CGTTTATATA
  AGCTATTCAT ATTTATGATC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145780814	ENSMUSSNP1068372	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52319375					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118086641 () rs orientation: forward

Symbol	Name	Function Class
Itpripl2	inositol 1,4,5-triphosphate receptor interacting protein-like 2	within coordinates
Rr381380	regulatory region 381380	within coordinates
Rr654485	regulatory region 654485	907 bp proximal
Rr654486	regulatory region 654486	1104 bp proximal
Tssr74438	transcription start site region 74438	1761 bp upstream
Tssr74439	transcription start site region 74439	118 bp downstream
Tssr74440	transcription start site region 74440	835 bp downstream