rs52319440 SNP Detail

Summary

• ID
  rs52319440
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126069931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA AAGAAAGAAA GAAAGAAAGA
  M
  AGACAGACAG ACAGACAGAC AGGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322450811	CHEV_7_133614273	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52319440					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126069931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19695	CpG island 19695	1967 bp proximal
Sh2b1	SH2B adaptor protein 1	within coordinates
Tssr69026	transcription start site region 69026	363 bp downstream
Tssr74716	transcription start site region 74716	543 bp upstream
Tssr74717	transcription start site region 74717	685 bp downstream
Tssr74718	transcription start site region 74718	1624 bp downstream
Tssr74719	transcription start site region 74719	1655 bp downstream