rs52322432 SNP Detail

Summary

• ID
  rs52322432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156261102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCC AGCTCAGTCT TCAAGCCTGT
  Y
  GAGATCTTCT GGAAACTTAT TCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320579280	CHEV_2_156244918	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52322432					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156261102 () rs orientation: forward

Symbol	Name	Function Class
Epb41l1	erythrocyte membrane protein band 4.1 like 1	mRNA-UTR
Rr568264	regulatory region 568264	1237 bp proximal
Rr568265	regulatory region 568265	1941 bp proximal
Tssr21155	transcription start site region 21155	474 bp downstream
Tssr21156	transcription start site region 21156	1538 bp upstream
Tssr21157	transcription start site region 21157	1655 bp upstream
Tssr21158	transcription start site region 21158	1856 bp upstream
Tssr21159	transcription start site region 21159	1870 bp upstream
Tssr21160	transcription start site region 21160	1893 bp upstream
Tssr21161	transcription start site region 21161	1901 bp upstream
Tssr21162	transcription start site region 21162	1934 bp upstream
Tssr21163	transcription start site region 21163	1947 bp upstream
Tssr21164	transcription start site region 21164	1980 bp upstream