rs52323490 SNP Detail

Summary

• ID
  rs52323490
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:87685200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAT TTATTATATG TAAGTACACT
  R
  CAGCTGTCCT TAGATACTCC AGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323773645	CHEV_11_87607876	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52323490					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87685200 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	1190 bp downstream
Mpo	myeloperoxidase	within coordinates
Rr370606	regulatory region 370606	within coordinates
Rr453904	regulatory region 453904	1777 bp proximal
Rr453905	regulatory region 453905	1831 bp proximal
Tssr3631	transcription start site region 3631	376 bp upstream
Tssr3632	transcription start site region 3632	888 bp upstream
Tssr3633	transcription start site region 3633	1939 bp upstream
Tssr103978	transcription start site region 103978	959 bp downstream
Tssr103979	transcription start site region 103979	929 bp downstream
Tssr103980	transcription start site region 103980	891 bp downstream
Tssr103981	transcription start site region 103981	569 bp downstream
Tssr103982	transcription start site region 103982	546 bp downstream
Tssr103983	transcription start site region 103983	527 bp downstream
Tssr103984	transcription start site region 103984	342 bp downstream
Tssr103985	transcription start site region 103985	317 bp downstream
Tssr103986	transcription start site region 103986	303 bp downstream
Tssr103987	transcription start site region 103987	162 bp downstream
Tssr103988	transcription start site region 103988	147 bp upstream
Tssr103989	transcription start site region 103989	405 bp upstream
Tssr103990	transcription start site region 103990	839 bp upstream
Tssr103991	transcription start site region 103991	912 bp upstream
Tssr103992	transcription start site region 103992	933 bp upstream
Tssr103993	transcription start site region 103993	1409 bp upstream
Tssr103994	transcription start site region 103994	1481 bp upstream
Tssr103995	transcription start site region 103995	1657 bp upstream
Tssr103996	transcription start site region 103996	1709 bp upstream
Tssr103997	transcription start site region 103997	1879 bp upstream
Tssr103998	transcription start site region 103998	1986 bp upstream