rs52325109 SNP Detail

Summary

• ID
  rs52325109
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85590591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGC TTTCTCTCTC TTCTCCCCGT
  C
  TCCCCGTCTC CCCGTCTCCC CTTAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148271226	ENSMUSSNP927244	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325042849	CHEV_15_85536820	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52325109					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85590591 () rs orientation: forward

Symbol	Name	Function Class
Lncppara	long noncoding RNA near Ppara	within coordinates
Mirc31	microRNA cluster 31, including Mirlet7c-2 through Mirlet7b	213 bp proximal
Mirlet7b	microRNA let7b	929 bp upstream
Mirlet7c-2	microRNA let7c-2	213 bp upstream
Rr507292	regulatory region 507292	within coordinates
Rr507293	regulatory region 507293	751 bp proximal