rs52327542 SNP Detail

Summary

• ID
  rs52327542
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40367569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AGGTGGAGTA GGTGGAGGGG
  T
  GTGGGGGCTG AGGAGGGAGT GGGTT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss136330442	ENSMUSSNP5777733	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52327542					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40367569 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	848 bp distal
Rr676840	regulatory region 676840	19 bp distal
Rr676841	regulatory region 676841	417 bp distal
Tssr84449	transcription start site region 84449	952 bp downstream
Tssr84450	transcription start site region 84450	363 bp downstream
Tssr84451	transcription start site region 84451	1382 bp upstream
Tssr84452	transcription start site region 84452	1410 bp upstream
Tssr88934	transcription start site region 88934	889 bp upstream
Tssr88935	transcription start site region 88935	838 bp upstream
Tssr88936	transcription start site region 88936	817 bp upstream
Tssr88937	transcription start site region 88937	753 bp upstream
Tssr88938	transcription start site region 88938	496 bp upstream
Tssr88939	transcription start site region 88939	461 bp upstream
Tssr88940	transcription start site region 88940	429 bp upstream
Tssr88941	transcription start site region 88941	140 bp upstream
Tssr88942	transcription start site region 88942	125 bp upstream
Tssr88943	transcription start site region 88943	97 bp upstream
Tssr88944	transcription start site region 88944	49 bp upstream
Tssr88945	transcription start site region 88945	32 bp upstream
Tssr88946	transcription start site region 88946	39 bp downstream
Tssr88947	transcription start site region 88947	67 bp downstream
Tssr88948	transcription start site region 88948	114 bp downstream
Tssr88949	transcription start site region 88949	1199 bp downstream