rs52327588 SNP Detail

Summary

• ID
  rs52327588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130914012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCTGCCGT CAAGAGACCA GAAGGACTGC CCAAATGAGT
  CCTGTCCATA TTTCTTTTTT TTTAATATTT ATTTATTTAT TATATGTAAA TACACTGTAG
  Y
  TATCCTCAGA CACTCCAGAA GAGGGAGTCA GATCTTGTTA TGGATGGTTG TGAGCCACCA
  TGTGGTTGCT GGGATTTGAA CTCCTGACCT TCGGAAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147598518	ENSMUSSNP3542079	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52327588					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130914012 () rs orientation: forward

Symbol	Name	Function Class
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	within coordinates
Tssr26345	transcription start site region 26345	933 bp upstream
Tssr26346	transcription start site region 26346	843 bp upstream
Tssr26347	transcription start site region 26347	812 bp upstream
Tssr26348	transcription start site region 26348	695 bp upstream
Tssr26349	transcription start site region 26349	531 bp downstream
Tssr26350	transcription start site region 26350	544 bp downstream
Tssr26351	transcription start site region 26351	561 bp downstream