rs52327941 SNP Detail

Summary

• ID
  rs52327941
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34726794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTAATG GCATGCTTTG
  TTACCTCTTC AGGATACACA CACACACACA CACACACACA CACACACACA CGCACACATA
  TAATATGATA TGTATATGTG TGTGTGTGTG TGTGTGTGTT TAATACTTTT GTCAGGCAAG
  TAGAATATTT CTCTTTAGAT GCTTTTGATT TCCACCCTGA ACAGAGTTTT TTGAGCAAAT
  A
  TTTCCCCTTT CTTAAAAGGC TTAAAAGGAT TATAGATAGG AGGAGGAGGA GGGGAGAGGA
  GGAGAAAAAG AGGAAGACAG GGAAGAGGAG AAAGAAATGG CTTGCAGTGT TTTGTTTACT
  TGATTGCTGT TAAGTCCTTA GGAATAGCTG AGACACTGAA GACATTGAGC TGGGTGAGGC
  ACTTGACCTG TTTCTTGCAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149099938	ENSMUSSNP4502271	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52327941					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34726794 () rs orientation: forward

Symbol	Name	Function Class
Gm63978	predicted gene, 63978	within coordinates
Gm63981	predicted gene, 63981	98 bp downstream
Tssr80908	transcription start site region 80908	888 bp downstream