rs52328311 SNP Detail

Summary

• ID
  rs52328311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28947054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCGCAGCCTC CACTTCTGAC CGGCAGAGGG CGCTGGGGAG
  CGGAAAGGGC TGCAAGTTTA ATAAGTCAAT GGGGGGCCTT CTTCTCCTTC TTCTCCTTCT
  Y
  CTTCTTCTCC TTCTTCTCCT TCTTCTCCAT CTTCTCCTTC TTCACCTTGG GTTTCTTGGC
  CTTGTCTGAG GAGCGTTCAT GCTTCTTGCA GCCAGCGGCA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148644046	ENSMUSSNP81298	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52328311					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28947054 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	within coordinates
Cpgi18753	CpG island 18753	within coordinates
Gm73451	predicted gene, 73451	within coordinates
Rr644523	regulatory region 644523	4 bp distal
Rr644524	regulatory region 644524	64 bp distal
Rr644525	regulatory region 644525	827 bp proximal
Tssr65617	transcription start site region 65617	1879 bp downstream
Tssr65618	transcription start site region 65618	6 bp upstream
Tssr71635	transcription start site region 71635	491 bp upstream
Tssr71636	transcription start site region 71636	97 bp downstream
Tssr71637	transcription start site region 71637	297 bp downstream
Tssr71638	transcription start site region 71638	315 bp downstream
Tssr71639	transcription start site region 71639	746 bp downstream
Tssr71640	transcription start site region 71640	828 bp downstream
Tssr71641	transcription start site region 71641	882 bp downstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	32 bp downstream