rs52328680 SNP Detail

Summary

• ID
  rs52328680
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54412767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTAGCACAA TTACACACAC ACTAACACAA CCACACACAC
  ATTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCCC
  W
  CGGCAATGCA ACTGCATCTG GTTTCCTTCA CGCAATGGTT GCTGTGTTTG CCTTACTTGA
  GACATGCAGT CATATCAGTT GGTTAGTTGG TTGGGTTTTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	MOLF/EiJ	PWD/PhJ
ss62393452	NES17236629	PERLEGEN	MM_PANEL2	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	MOLF/EiJ	PWD/PhJ
rs52328680					SNP	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393452	NES17236629	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54412767 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	1699 bp distal
Rr492148	regulatory region 492148	1044 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	961 bp upstream
Traj42	T cell receptor alpha joining 42	463 bp upstream
Traj43	T cell receptor alpha joining 43	512 bp downstream
Traj44	T cell receptor alpha joining 44	1560 bp downstream
Tssr125558	transcription start site region 125558	1776 bp downstream
Tssr125559	transcription start site region 125559	1756 bp downstream
Tssr125560	transcription start site region 125560	1720 bp downstream
Tssr125561	transcription start site region 125561	1706 bp downstream
Tssr125562	transcription start site region 125562	909 bp downstream
Tssr125563	transcription start site region 125563	684 bp downstream
Tssr125564	transcription start site region 125564	431 bp downstream
Tssr125565	transcription start site region 125565	342 bp downstream
Tssr125566	transcription start site region 125566	664 bp upstream
Tssr125567	transcription start site region 125567	898 bp upstream
Tssr125568	transcription start site region 125568	917 bp upstream
Tssr125569	transcription start site region 125569	943 bp upstream
Tssr125570	transcription start site region 125570	961 bp upstream
Tssr128543	transcription start site region 128543	1347 bp downstream