rs52333774 SNP Detail

Summary

• ID
  rs52333774
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84340806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTA GAAACATGGG CTAAAACATC
  A
  AGAGGATTTT GCCCAAGAAG ATGAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145209040	ENSMUSSNP6555816	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322297949	CHEV_7_91840108	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52333774					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84340806 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	1089 bp distal
Rr400423	regulatory region 400423	1483 bp downstream
Rr650632	regulatory region 650632	1844 bp distal
Rr650633	regulatory region 650633	1652 bp distal
Rr650634	regulatory region 650634	1151 bp distal
Tssr73444	transcription start site region 73444	1777 bp upstream
Tssr73445	transcription start site region 73445	1764 bp upstream
Tssr73446	transcription start site region 73446	1699 bp upstream
Tssr73447	transcription start site region 73447	1680 bp upstream
Tssr73448	transcription start site region 73448	1659 bp upstream
Tssr73449	transcription start site region 73449	1634 bp upstream
Tssr73450	transcription start site region 73450	1607 bp upstream
Zfand6	zinc finger, AN1-type domain 6	1582 bp upstream